ИССЛЕДОВАНИЕ МИКРОБИОТЫ КИШЕЧНИКА ЖИТЕЛЕЙ ВЬЕТНАМА И РОССИИ
Nội dung chính của bài viết
Tóm tắt
NGHIÊN CỨU HỆ VI SINH VẬT ĐƯỜNG RUỘT Ở NGƯỜI VIỆT NAM VÀ NGA
Nhóm tác giả tiến hành so sánh đặc điểm hệ các vi sinh vật đường ruột của người tình nguyện khỏe mạnh Việt Nam và Nga. Việc phân tích so sánh được tiến hành thông qua sử dụng các phương pháp phân lập nuôi cấy vi khuẩn và phương pháp PCR thời gian thực.
Sự gia tăng số lượng các vi sinh vật có thuộc tính phân giải hydratcacbon trong đường ruột người Việt Nam có lẽ liên quan với việc sử dụng các loại đường dễ hấp thu có trong trái cây cũng như đặc điểm lên men của các loại thực phẩm sử dụng. Số lượng lớn Lactobacillus trong đường ruột người Nga có lẽ liên quan với các sản phẩm sữa có chứa các probiotic được sử dụng thường xuyên từ nhiều năm nay ở Liên bang Nga.
Với các kết quả trên, nhóm tác giả thấy rằng cần lưu ý đến các vi sinh vật có trong thực phẩm thường dùng của mỗi dân tộc trong việc phân tích, đánh giá các số liệu về hệ vi sinh vật đường ruột của dân cư các vùng địa lý khác nhau, trong việc phân tích dịch tễ và sản xuất các chế phẩm probiotic/autoprobiotic phù hợp với các đặc điểm của vùng miền.
Từ khóa
Hệ vi sinh vật đường ruột, микробиота, enterococcus faecium, enterococcus hirae, microbiota
Chi tiết bài viết
Tài liệu tham khảo
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2. Бондаренко В.М., Суворов А.Н. Вершинин А.Е. и соавт., Различия по набору генов патогенноcти производственных и выделенных от больных штаммов энтерококков, Научно-практический журнал БИО препараты. Профилактика, диагностика, лечение, 2008, 4(32): 3-6.
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6. Старовойтова С.А., Обзор международных проектов в области микробной экологии человека и создании пробиотиков, Biotechnology acta, 2013, 3(3):121-131.
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8. Суворов А.Н., Симаненков В.И., Сундукова З.Р. и соавт., Способ получения аутопробиотика на основе Enterococcus faecium, представителя индигенной микрофлоры кишечника, патент на изобретение RUS 2460778, 30.12.2010.
9. Ткаченко Е.И., Суворова А.Н., Дисбиоз кишечника, Руководство по диагностике и лечению, СПб: ИнформМед, 2009, с.276.
10. Adak A., Maity C., Ghosh K., Pati B.R., Mondal K.C., Dynamics of predominant microbiota in the human gastrointestinal tract and change in luminal enzymes and immunoglobulin profile during high-altitude adaptation, Folia microbiologica, 2013, 58(6): 523-528.
11. Arumugam M., Raes J., Pelletier E., Enterotypes of the human gut microbiome, Nature, 2011, 473:174-180.
12. Chatterjee B., Thakur S.S., Microbial profiling: extend ethnicity of human microbiome. Nature, 2012, 487(7405):39-39.
13. Сhen Y.S., Wu H.C., Lo H.Y. et al., Isolation and characterisation of lactic acid bacteria from jiang‐gua (fermented cucumbers), a traditional fermented food in Taiwan, Journal of the Science of Food and Agriculture, 2012, 92(10):2069-2075.
14. Chen Y.S., Liou M.S., Ji S.H. et al., Isolation and characterization of lactic acid bacteria from yan‐tsai‐shin (fermented broccoli stems), a traditional fermented food in Taiwan, Journal of applied microbiology, 2013, 115(1):125-132.
15. Dehingia M., Thangjam K., Talukdar N.C. et al., Gut bacterial diversity of the tribes of India and comparison with the worldwide data, 2015, www.nature.com/scietificrepots.
16. Devriese L.A., Vancanneyt M., Descheemaeker P. et al., Differentiation and identification of Enterococcus durans, E. hirae and E. villorum, J Appl Microbiol, 2002, 5(92):821-827.
17. Ermolenko E., Gromova L., Borschev Y. et al., Influence of different probiotic lactic acid bacteria on microbiota and metabolism of rats with dysbiosis, Bioscience of Microbiota, Food and Health, 2013, 2(32):41-49.
18. Etheridge M.E., Yolken R.H., Vonderfecht S.L., Enterococcus hirae implicated as a cause of diarrhea in suckling rats, Clin.Microbiol., 1988, 26:1741-1744.
19. Farrow J., Matthew A.E., Collins D., Enterococcus hirae, a New Species That Includes Amino Acid Assay Strain NCDO 1258 and Strains Causing Growth Depression in Young Chickens, Int J Syst Evol Microbiol, 1985, 35:73-75.
20. Filippo C., Cavalieri D., Di Paola et al., Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa, Proceedings of the National Academy of Sciences, 2010, 107(33): 14691-14696.
21. Grandy G., Jose Z., Soria R. et al., Brain-gut-microbe communication in health and disease, Front Physiol, 2011, 2, p.3389.
22. Han J., Danell R.M., Patel J.R. et al., Towards high- throughput metabolomics using ultrahigh-field Fourier transformion cyclotron resonance mass spectrometry, Metabolomics, 2008, 4:128-140.
23. Hehemann J.H., Correc G., Barbeyron T., et al., Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota, Nature, 2010, 464:908-912.
24. Kwok L.Y., Zhang J., Guo Z. et al., Characterization of fecal microbiota across seven Chinese ethnic groups by quantitative polymerase chain reaction. PloS one, 2014, 9(4):e93631.
25. Li L., Zhao X., Comparative analyses of fecal microbiota in Tibetan and Chinese Han living at low or high altitude by barcoded 454 pyrosequencing, Scientific reports, 2015.
26. Ley R.E., Peterson D.A., Gordon J.I., Ecological and evolutionary forces shaping microbial diversity in the human intestine, Cell, 2006, 124:837-848.
27. Lata P., Ram S., Agrawal M., Shanker R., Enterococci in river Ganga surface waters: propensity of species distribution, dissemination of antimicrobial-resistance and virulence-markers among species along landscape, BMC Microbiol, 2009, 9(1):1-13.
28. Martin F.P., Sprenger N., Montoliu I. et al., Dietary modulation of gut functional ecology studied by fecal metabonomics, J Proteome Res., 2010, 9:5284-5295.
29. Mueller S., Saunier K., Hanisch C. et al., Differences in fecal microbiota in different European study populations in relation to age, gender, and country: a cross-sectional study, Appl. Environ. Microbiol., 2006, 2(72):1027-1033.
30. Nakayama J., Watanabe K., Jiang J. et al., Diversity in gut bacterial community of school-age children in Asia, Scientific reports, 2015, № 5, p.8397.
31. Nguyen D.T.L., Van Hoorde K., De Brandt E., Aerts M., A description of the lactic acid bacteria microbiota associated with the production of traditional fermented vegetables in Vietnam, International Journal of Food Microbiology, 2013, 163, p.19-27.
32. Neish A.S., Microbes in gastrointestinal health and disease, 2009, 1(136):65-80.
33. Pompei R., Lampis G., Berlutti F., Thaller M.C., Characterization of yellow-pigmented enterococci from severe human infections, Journal of clinical microbiology, 1991, 29(12):2884-2886.
34. Prakash V.P., Rao S.R., Parija S.C., Emergence of unusual species of enterococci causing infections, South India, BMC Infect Dis., 2005, 17(5):14.
35. Peng Q.Q., Basang Z., Cui C.Y. et al., Physiological responses and evaluation of effects of BMI, smoking and drinking in high altitude acclimatization: a cohort study in Chinese Han young males, PloS one, 8(11):e79346.
36. Rossi F., Felis G.E., Martinelli A., Calcavecchia B., Torriani S. Microbiological characteristics of fresh tofu produced in small industrial scale and identification of specific spoiling mcroorganisms), Food sciencence and technology, 2016, 70:280-285.
37. Sepp E., Julge K., Vasar M. et al., Intestinal microflora of Estonian and Swedish infants, Acta Paediatrica, 1997, 86(9):956-961.
38. Tan C.K., Lai C.C., Wang J.Y. et al., Bacteremia caused by non-faecalis and non-faecium enterococcus species at a Medical center in Taiwan, J Infect., 2010, 61(1):34-43.
39. Yang H., Zou H., Qu C. et al., Dominant microorganisms during the spontaneous of Suan Cai, a Chinese fermenterd Vegetable, Food Science and Technology, 2014, 20(4):915-926.
40. Wang T., Cai G., Qiu Y. et al., Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers, ISME J., 2012, 6:320-329.
41. Wu G.D., Chen J., Hoffmann C. et al., Linking long-term dietary patterns with gut microbial enterotypes, Science, 2011, 334(6052):105-108.
42. Zhang J., Guo Z., Xue Z. et al., A phylo-functional core of gut microbiota in healthy young Chinese cohorts across lifestyles, The ISME journal, geography and ethnicities, 2015, 9(9):1979-1990.
2. Бондаренко В.М., Суворов А.Н. Вершинин А.Е. и соавт., Различия по набору генов патогенноcти производственных и выделенных от больных штаммов энтерококков, Научно-практический журнал БИО препараты. Профилактика, диагностика, лечение, 2008, 4(32): 3-6.
3. Борщев Ю.Ю., Ермоленко Е.И., Метаболический синдром и микроэкология кишечника, Трансляционная медицина, 2014, 1:19-28.
4. Доронин А.Ф., Шендеров Б.А., Функциональное питание, М.: Грантъ, 2002, 296 с.
5. Ильин В.К., Суворов А.Н., Кирюхина Н.В. и соавт., Аутопробиотики как средство профилактики инфекционно воспалительных заболеваний у человека в искусственной среде обитания, Вестник Российской академии медицинских наук, 2013, 2:56-62.
6. Старовойтова С.А., Обзор международных проектов в области микробной экологии человека и создании пробиотиков, Biotechnology acta, 2013, 3(3):121-131.
7. Суворов А.Н., Ткаченко Е.И., Успенский Ю.П., Дисбиоз кишечника. Руководство по диагностике и лечению, 2013, с.282.
8. Суворов А.Н., Симаненков В.И., Сундукова З.Р. и соавт., Способ получения аутопробиотика на основе Enterococcus faecium, представителя индигенной микрофлоры кишечника, патент на изобретение RUS 2460778, 30.12.2010.
9. Ткаченко Е.И., Суворова А.Н., Дисбиоз кишечника, Руководство по диагностике и лечению, СПб: ИнформМед, 2009, с.276.
10. Adak A., Maity C., Ghosh K., Pati B.R., Mondal K.C., Dynamics of predominant microbiota in the human gastrointestinal tract and change in luminal enzymes and immunoglobulin profile during high-altitude adaptation, Folia microbiologica, 2013, 58(6): 523-528.
11. Arumugam M., Raes J., Pelletier E., Enterotypes of the human gut microbiome, Nature, 2011, 473:174-180.
12. Chatterjee B., Thakur S.S., Microbial profiling: extend ethnicity of human microbiome. Nature, 2012, 487(7405):39-39.
13. Сhen Y.S., Wu H.C., Lo H.Y. et al., Isolation and characterisation of lactic acid bacteria from jiang‐gua (fermented cucumbers), a traditional fermented food in Taiwan, Journal of the Science of Food and Agriculture, 2012, 92(10):2069-2075.
14. Chen Y.S., Liou M.S., Ji S.H. et al., Isolation and characterization of lactic acid bacteria from yan‐tsai‐shin (fermented broccoli stems), a traditional fermented food in Taiwan, Journal of applied microbiology, 2013, 115(1):125-132.
15. Dehingia M., Thangjam K., Talukdar N.C. et al., Gut bacterial diversity of the tribes of India and comparison with the worldwide data, 2015, www.nature.com/scietificrepots.
16. Devriese L.A., Vancanneyt M., Descheemaeker P. et al., Differentiation and identification of Enterococcus durans, E. hirae and E. villorum, J Appl Microbiol, 2002, 5(92):821-827.
17. Ermolenko E., Gromova L., Borschev Y. et al., Influence of different probiotic lactic acid bacteria on microbiota and metabolism of rats with dysbiosis, Bioscience of Microbiota, Food and Health, 2013, 2(32):41-49.
18. Etheridge M.E., Yolken R.H., Vonderfecht S.L., Enterococcus hirae implicated as a cause of diarrhea in suckling rats, Clin.Microbiol., 1988, 26:1741-1744.
19. Farrow J., Matthew A.E., Collins D., Enterococcus hirae, a New Species That Includes Amino Acid Assay Strain NCDO 1258 and Strains Causing Growth Depression in Young Chickens, Int J Syst Evol Microbiol, 1985, 35:73-75.
20. Filippo C., Cavalieri D., Di Paola et al., Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa, Proceedings of the National Academy of Sciences, 2010, 107(33): 14691-14696.
21. Grandy G., Jose Z., Soria R. et al., Brain-gut-microbe communication in health and disease, Front Physiol, 2011, 2, p.3389.
22. Han J., Danell R.M., Patel J.R. et al., Towards high- throughput metabolomics using ultrahigh-field Fourier transformion cyclotron resonance mass spectrometry, Metabolomics, 2008, 4:128-140.
23. Hehemann J.H., Correc G., Barbeyron T., et al., Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota, Nature, 2010, 464:908-912.
24. Kwok L.Y., Zhang J., Guo Z. et al., Characterization of fecal microbiota across seven Chinese ethnic groups by quantitative polymerase chain reaction. PloS one, 2014, 9(4):e93631.
25. Li L., Zhao X., Comparative analyses of fecal microbiota in Tibetan and Chinese Han living at low or high altitude by barcoded 454 pyrosequencing, Scientific reports, 2015.
26. Ley R.E., Peterson D.A., Gordon J.I., Ecological and evolutionary forces shaping microbial diversity in the human intestine, Cell, 2006, 124:837-848.
27. Lata P., Ram S., Agrawal M., Shanker R., Enterococci in river Ganga surface waters: propensity of species distribution, dissemination of antimicrobial-resistance and virulence-markers among species along landscape, BMC Microbiol, 2009, 9(1):1-13.
28. Martin F.P., Sprenger N., Montoliu I. et al., Dietary modulation of gut functional ecology studied by fecal metabonomics, J Proteome Res., 2010, 9:5284-5295.
29. Mueller S., Saunier K., Hanisch C. et al., Differences in fecal microbiota in different European study populations in relation to age, gender, and country: a cross-sectional study, Appl. Environ. Microbiol., 2006, 2(72):1027-1033.
30. Nakayama J., Watanabe K., Jiang J. et al., Diversity in gut bacterial community of school-age children in Asia, Scientific reports, 2015, № 5, p.8397.
31. Nguyen D.T.L., Van Hoorde K., De Brandt E., Aerts M., A description of the lactic acid bacteria microbiota associated with the production of traditional fermented vegetables in Vietnam, International Journal of Food Microbiology, 2013, 163, p.19-27.
32. Neish A.S., Microbes in gastrointestinal health and disease, 2009, 1(136):65-80.
33. Pompei R., Lampis G., Berlutti F., Thaller M.C., Characterization of yellow-pigmented enterococci from severe human infections, Journal of clinical microbiology, 1991, 29(12):2884-2886.
34. Prakash V.P., Rao S.R., Parija S.C., Emergence of unusual species of enterococci causing infections, South India, BMC Infect Dis., 2005, 17(5):14.
35. Peng Q.Q., Basang Z., Cui C.Y. et al., Physiological responses and evaluation of effects of BMI, smoking and drinking in high altitude acclimatization: a cohort study in Chinese Han young males, PloS one, 8(11):e79346.
36. Rossi F., Felis G.E., Martinelli A., Calcavecchia B., Torriani S. Microbiological characteristics of fresh tofu produced in small industrial scale and identification of specific spoiling mcroorganisms), Food sciencence and technology, 2016, 70:280-285.
37. Sepp E., Julge K., Vasar M. et al., Intestinal microflora of Estonian and Swedish infants, Acta Paediatrica, 1997, 86(9):956-961.
38. Tan C.K., Lai C.C., Wang J.Y. et al., Bacteremia caused by non-faecalis and non-faecium enterococcus species at a Medical center in Taiwan, J Infect., 2010, 61(1):34-43.
39. Yang H., Zou H., Qu C. et al., Dominant microorganisms during the spontaneous of Suan Cai, a Chinese fermenterd Vegetable, Food Science and Technology, 2014, 20(4):915-926.
40. Wang T., Cai G., Qiu Y. et al., Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers, ISME J., 2012, 6:320-329.
41. Wu G.D., Chen J., Hoffmann C. et al., Linking long-term dietary patterns with gut microbial enterotypes, Science, 2011, 334(6052):105-108.
42. Zhang J., Guo Z., Xue Z. et al., A phylo-functional core of gut microbiota in healthy young Chinese cohorts across lifestyles, The ISME journal, geography and ethnicities, 2015, 9(9):1979-1990.